| Original Article Pages 1 - 8 Amine Boudaoud, Bakir Mamache, Wafa Tombari, Jihene Lachhab, Abdeljelil Ghram, Nadir Alloui | | | Original Article Pages 9 - 14 Dalale Behar, Lamia Boublenza, Bouchra Dahmani, Nafissa Chabni, Kassem Belatbi, Ikram Breik, Amel Benfoula, Ilyes Zatla, Hafida Hassaine | | | and for detecting by nested RT-PCR Short Communication Pages 15 - 22 Susana A. Dandlen, Guilherme Russo, Soraia Horta, Amílcar Duarte, Paulo Paiva, Natália Marques | | | Short Communication Pages 23 - 28 Tatiana A. Timofeeva, Irina A. Rudneva, Aleksandr V. Lyashko, Irina M. Kupriyanova, Anastasia A. Treshchalina, Alexandra S. Gambaryan, Simone E. Adams, Galina K. Sadykova, Alexey G. Prilipov, Boris I. Timofeev, Natalia F. Lomakina | | | Original Article Pages 29 - 33 T. Valkov, G. Dimitrov, J. Hristova, G. Donkov, N. Yancheva-Petrova, R. Argirova | | | Short Communication Pages 35 - 38 Thyyar M. Ravindranath | | | Mini Review Pages 39 - 47 Martin Castelnovo, Fabien Montel, Cendrine Faivre-Moskalenko | | Quick Links | | | | | | Browse in Alphabetical Order : | | Browse by Subject Classification : | Current Research in VirologyAims and scope. Current Research in Virology is ready to receive high quality research articles, CRV is dedicated to cover studies of viruses and virus-like agents, their structure, classification and evolution, their ways to infect and exploit cells for virus reproduction, the diseases they cause, the techniques to isolate and culture them, and their use in research and therapy. It is with great pleasure that we announce the SGAMR Annual Awards 2020. This award is given annually to Researchers and Reviewers of International Journal of Structural Glass and Advanced Materials Research (SGAMR) who have shown innovative contributions and promising research as well as others who have excelled in their Editorial duties. This special issue "Neuroinflammation and COVID-19" aims to provide a space for debate in the face of the growing evidence on the affectation of the nervous system by COVID-19, supported by original studies and case series. The SGAMR Editorial Board is pleased to announce the inauguration of the yearly “SGAMR Young Researcher Award” (SGAMR-YRA). The best paper published by a young researcher will be selected by a journal committee, from the Editorial Board. - Recently Published
- Most Viewed
- Most Downloaded
Virology: Current ResearchISSN: 2736-657X - Journal h-index : 6
- Journal cite score : 2.78
- Journal impact factor : 1.42
- Average acceptance to publication time (5-7 days)
- Average article processing time (30-45 days) Less than 5 volumes 30 days 8 - 9 volumes 40 days 10 and more volumes 45 days
Editor-in-ChiefN Chandra Wickramasinghe , , PH.D Director, Buckingham Centre for Astrobiology University of Buckingham, UK View More » About the JournalVirology a branch of science focuses on conventional fields of virology such as classification, structure infection and treatment and advanced scientific areas such as viral genHilaris SRL, computational approaches in viral disease diagnosis etc. Over the past, the world witnessed major burdens like HIV, HPV and presently these organisms challenge the researchers with latest outbreaks like EBOLA and Zika virus. This indicates the world of virologists should be updated every day. Virology: Current Research publishes peer reviewed content related virology, but not limited to viral genetics, GenHilaris SRL, Computational Virology, Molecular Virology, Vaccine development, emerging diseases, infectious diseases, Immunology, Clinical Virology, Animal and plant viruses, Viral diseases and diagnosis, Laboratory medicine, etc. Journal editor invites original reports, expert opinions, reviews, communications and editorials for publication in the journal. Submit manuscript at https://www.scholarscentral.org/submissions/virology-current-research.html or send as an e-mail attachment to the Editorial Office at: [email protected] Rapid Publication Service Hilaris Publishing is offering wide range of opportunities, options and services for the prospective authors to publish their scholarly contributions. The journal caters to the demands of the fast publication without compromising on the editorial quality including manuscript peer-review. This flexibility is being provided to ensure earliest author credibility to their respective contributions and this will also ensure timely dissemination of research outcomes for efficient integration, effective translation and reduced redundancy. Authors have the option to choose between the standard open access publication service which takes its own course of time for complete publication process or can opt for rapid publication service wherein the article is published at the earliest date (Includes multiple subject experts commissioning for securing earliest peer-review comments). The authors can avail this flexibility based on the personal preference, funding agency guidelines or Institutional or organizational requirements. Regardless of the option, all manuscripts undergo thorough peer-review process, editorial assessment and production process. Fast Editorial Execution and Review Process (FEE-Review Process) Authors who are willing to publish their articles under this mode can make a pre-payment of $99 towards express peer-review and editorial decision. First editorial decision in 3 days and final decision with review comments in 5 days from the date of submission. Galley proof generation will be done in next 2 days from acceptance or maximum 5 days (For manuscripts notified for revision by external reviewer). Manuscripts accepted for publication will be charged regular APC. Authors retain the copyright of their publication and the final version of the article will be published in both HTML and PDF formats as well as XML formats for transmitting to indexing databases. The editorial team of the Journal will ensure adherence to scientific publication guidelines. Articles published in Virology: Current Research have been cited by esteemed scholars and scientists all around the world. Virology: Current Research has got h-index 6 , which means every article in Virology: Current Research has got 6 average citations. Recent ArticlesAcross Kingdoms Exploring Animal and Plant VirusesArfaz Hadi * Deciphering the Molecular Puzzle Advances in Molecular VirologyShort Communication From Lab to Clinic Insights into Clinical VirologyArhaan Musafir * and Tim Brad Facing the Unknown Emerging Diseases in the Era of VirologyBrief Report Relevant TopicsAwards & nominations, 50+ million readerbase, journal highlights, google scholar citation report, citations: 187. Virology: Current Research received 187 citations as per Google Scholar report Virology: Current Research peer review process verified at publonsRelated LinksOpen access journals. Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript. - View all journals
- Explore content
- About the journal
- Publish with us
- Sign up for alerts
- Review Article
- Published: 16 July 2019
Evolution and ecology of plant viruses- Pierre Lefeuvre ORCID: orcid.org/0000-0003-2645-8098 1 ,
- Darren P. Martin 2 ,
- Santiago F. Elena 3 , 4 ,
- Dionne N. Shepherd 5 ,
- Philippe Roumagnac ORCID: orcid.org/0000-0001-5002-6039 6 , 7 &
- Arvind Varsani ORCID: orcid.org/0000-0003-4111-2415 8 , 9
Nature Reviews Microbiology volume 17 , pages 632–644 ( 2019 ) Cite this article 11k Accesses 153 Citations 155 Altmetric Metrics details - Microbial ecology
- Viral evolution
- Viral vectors
- Virus–host interactions
The discovery of the first non-cellular infectious agent, later determined to be tobacco mosaic virus, paved the way for the field of virology. In the ensuing decades, research focused on discovering and eliminating viral threats to plant and animal health. However, recent conceptual and methodological revolutions have made it clear that viruses are not merely agents of destruction but essential components of global ecosystems. As plants make up over 80% of the biomass on Earth, plant viruses likely have a larger impact on ecosystem stability and function than viruses of other kingdoms. Besides preventing overgrowth of genetically homogeneous plant populations such as crop plants, some plant viruses might also promote the adaptation of their hosts to changing environments. However, estimates of the extent and frequencies of such mutualistic interactions remain controversial. In this Review, we focus on the origins of plant viruses and the evolution of interactions between these viruses and both their hosts and transmission vectors. We also identify currently unknown aspects of plant virus ecology and evolution that are of practical importance and that should be resolvable in the near future through viral metagenomics. This is a preview of subscription content, access via your institution Access optionsAccess Nature and 54 other Nature Portfolio journals Get Nature+, our best-value online-access subscription 24,99 € / 30 days cancel any time Subscribe to this journal Receive 12 print issues and online access 195,33 € per year only 16,28 € per issue Buy this article - Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout Similar content being viewed by othersVertical and horizontal transmission of plant viruses: two extremes of a continuum?Seasonality of interactions between a plant virus and its host during persistent infection in a natural environmentEvolutionary dynamics of Tomato spotted wilt virus within and between alternate plant hosts and thripsEdwards, R. A. & Rohwer, F. Viral metagenomics. Nat. Rev. Microbiol. 3 , 504–510 (2005). CAS PubMed Google Scholar Greninger, A. L. A decade of RNA virus metagenomics is (not) enough. Virus Res. 244 , 218–229 (2018). Koonin, E. V. & Dolja, V. V. Metaviromics: a tectonic shift in understanding virus evolution. Virus Res. 246 , A1–A3 (2018). This review highlights how our understanding of virology is changing as a consequence of advances in metagenomics . Suttle, C. A. Viruses: unlocking the greatest biodiversity on Earth. Genome 56 , 542–544 (2013). PubMed Google Scholar Gregory, A. C. et al. Marine DNA viral macro- and microdiversity from pole to pole. Cell 177 , 1109–1123 (2019). This study provides the most comprehensive inventory of marine viral diversity to date . CAS PubMed PubMed Central Google Scholar Morris, J. L. et al. The timescale of early land plant evolution. Proc. Natl Acad. Sci. USA 115 , E2274–E2283 (2018). Mushegian, A., Shipunov, A. & Elena, S. F. Changes in the composition of the RNA virome mark evolutionary transitions in green plants. BMC Biol. 14 , 68 (2016). PubMed PubMed Central Google Scholar Bernardo, P. et al. Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. ISME J. 12 , 173–184 (2018). This article is a viromics study of agro-ecological interfaces that demonstrates the impacts of agriculture on the diversity and prevalence of plant-associated viruses . Muthukumar, V. et al. Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions. Virus Res. 141 , 169–173 (2009). Koonin, E. V., Dolja, V. V. & Krupovic, M. Origins and evolution of viruses of eukaryotes: the ultimate modularity. Virology 479–480 , 2–25 (2015). Nasir, A. & Caetano-Anolles, G. A phylogenomic data-driven exploration of viral origins and evolution. Sci. Adv. 1 , e1500527 (2015). Dolja, V. V. & Koonin, E. V. Common origins and host-dependent diversity of plant and animal viromes. Curr. Opin. Virol. 1 , 322–331 (2011). Wolf, Y. I. et al. Origins and evolution of the global RNA virome. mBio 9 , e02329–18 (2018). This study yields new insights relating to the evolution of RNA viruses in light of novel RNA viruses that have recently been discovered using metagenomics techniques . Volk, M., Gibbs, A. J. & Suttle, C. A. Metagenomes of a freshwater charavirus from British Columbia provide a window into ancient lineages of viruses. Viruses 11 , 299 (2019). Google Scholar Krupovic, M. & Koonin, E. V. Multiple origins of viral capsid proteins from cellular ancestors. Proc. Natl Acad. Sci. USA 114 , E2401–E2410 (2017). Dolja, V. V. & Koonin, E. V. Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer. Virus Res. 244 , 36–52 (2018). Roossinck, M. J. Evolutionary and ecological links between plant and fungal viruses. New Phytol. 221 , 86–92 (2019). This review describes our current knowledge of mycoviruses and their evolutionary relationships with plant viruses . Vieira, P. & Nemchinov, L. G. A novel species of RNA virus associated with root lesion nematode Pratylenchus penetrans . J. Gen. Virol. 100 , 704–708 (2019). Hollings, M. Viruses associated with a die-back disease of cultivated mushroom. Nature 196 , 962–965 (1962). Pearson, M. N., Beever, R. E., Boine, B. & Arthur, K. Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol. Plant Pathol. 10 , 115–128 (2009). Mu, F. et al. Virome characterization of a collection of S. sclerotiorum from Australia. Front. Microbiol. 8 , 2540 (2017). Marzano, S. L. & Domier, L. L. Novel mycoviruses discovered from metatranscriptomics survey of soybean phyllosphere phytobiomes. Virus Res. 213 , 332–342 (2016). Gilbert, K., Holcomb, E. E., Allscheid, R. L. & Carrington, J. Discovery of new mycoviral genomes within publicly available fungal transcriptomic datasets. Preprint at bioRxiv https://www.biorxiv.org/content/10.1101/510404v1 (2019). Marzano, S. L. et al. Identification of diverse mycoviruses through metatranscriptomics characterization of the viromes of five major fungal plant pathogens. J. Virol. 90 , 6846–6863 (2016). Frank, A. C. & Wolfe, K. H. Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes. Eukaryot. Cell 8 , 1521–1531 (2009). Taylor, D. J. & Bruenn, J. The evolution of novel fungal genes from non-retroviral RNA viruses. BMC Biol. 7 , 88 (2009). Hillman, B. I. & Cai, G. The family Narnaviridae: simplest of RNA viruses. Adv. Virus Res. 86 , 149–176 (2013). Nerva, L. et al. Biological and molecular characterization of Chenopodium quinoa mitovirus 1 reveals a distinct small RNA response compared to those of cytoplasmic RNA viruses. J. Virol. 93 , e01998–18 (2019). Rastgou, M. et al. Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin. J. Gen. Virol. 90 , 2525–2535 (2009). Nerva, L., Varese, G. C., Falk, B. W. & Turina, M. Mycoviruses of an endophytic fungus can replicate in plant cells: evolutionary implications. Sci. Rep. 7 , 1908 (2017). Andika, I. B. et al. Phytopathogenic fungus hosts a plant virus: a naturally occurring cross-kingdom viral infection. Proc. Natl Acad. Sci. USA 114 , 12267–12272 (2017). Mascia, T. et al. Infection of Colletotrichum acutatum and Phytophthora infestans by taxonomically different plant viruses. Eur. J. Plant Pathol. 153 , 1001–1017 (2018). Malloch, D. W., Pirozynski, K. A. & Raven, P. H. Ecological and evolutionary significance of mycorrhizal symbioses in vascular plants (a review). Proc. Natl Acad. Sci. USA 77 , 2113–2118 (1980). Bonfante, P. & Genre, A. Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis. Nat. Commun. 1 , 48 (2010). Redman, R. S., Sheehan, K. B., Stout, R. G., Rodriguez, R. J. & Henson, J. M. Thermotolerance generated by plant/fungal symbiosis. Science 298 , 1581 (2002). Rodriguez, R. & Redman, R. More than 400 million years of evolution and some plants still can’t make it on their own: plant stress tolerance via fungal symbiosis. J. Exp. Bot. 59 , 1109–1114 (2008). Li, C. X. et al. Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. eLife 4 , e05378 (2015). PubMed Central Google Scholar Shi, M. et al. Redefining the invertebrate RNA virosphere. Nature 540 , 539–543 (2016). This study identified ~1,400 RNA viruses using metatranscriptomics, which tremendously expands our current knowledge of RNA virus diversity . Dasgupta, R., Garcia, B. H. 2nd & Goodman, R. M. Systemic spread of an RNA insect virus in plants expressing plant viral movement protein genes. Proc. Natl Acad. Sci. USA 98 , 4910–4915 (2001). Gibbs, A. J., Wood, J., Garcia-Arenal, F., Ohshima, K. & Armstrong, J. S. Tobamoviruses have probably co-diverged with their eudicotyledonous hosts for at least 110 million years. Virus Evol. 1 , vev019 (2015). Stobbe, A. H., Melcher, U., Palmer, M. W., Roossinck, M. J. & Shen, G. Co-divergence and host-switching in the evolution of tobamoviruses. J. Gen. Virol. 93 , 408–418 (2012). Gibbs, A. How ancient are the tobamoviruses? Intervirology 14 , 101–108 (1980). Varsani, A., Lefeuvre, P., Roumagnac, P. & Martin, D. Notes on recombination and reassortment in multipartite/segmented viruses. Curr. Opin. Virol. 33 , 156–166 (2018). Briddon, R. W. et al. Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites. Arch. Virol. 163 , 2587–2600 (2018). Gnanasekaran, P. & Chakraborty, S. Biology of viral satellites and their role in pathogenesis. Curr. Opin. Virol. 33 , 96–105 (2018). Lucia-Sanz, A. & Manrubia, S. Multipartite viruses: adaptive trick or evolutionary treat? NPJ Syst. Biol. Appl. 3 , 34 (2017). Escriu, F., Fraile, A. & Garcia-Arenal, F. Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus. PLOS Pathog. 3 , e8 (2007). Sicard, A. et al. Gene copy number is differentially regulated in a multipartite virus. Nat. Commun. 4 , 2248 (2013). Wu, B., Zwart, M. P., Sanchez-Navarro, J. A. & Elena, S. F. Within-host evolution of segments ratio for the tripartite genome of alfalfa mosaic virus. Sci. Rep. 7 , 5004 (2017). Benitez-Alfonso, Y., Faulkner, C., Ritzenthaler, C. & Maule, A. J. Plasmodesmata: gateways to local and systemic virus infection. Mol. Plant Microbe Interact. 23 , 1403–1412 (2010). Lucas, W. J. Plant viral movement proteins: agents for cell-to-cell trafficking of viral genomes. Virology 344 , 169–184 (2006). Sicard, A., Michalakis, Y., Gutierrez, S. & Blanc, S. The strange lifestyle of multipartite viruses. PLOS Pathog. 12 , e1005819 (2016). This article reviews the ‘lifestyles’ of multipartite viruses, their peculiarities and the gaps in our understanding of their biology . Gilmer, D., Ratti, C. & Michel, F. Long-distance movement of helical multipartite phytoviruses: keep connected or die? Curr. Opin. Virol. 33 , 120–128 (2018). Fauquet, C. M., Mayo, M. A., Maniloff, J., Desselberger, U. & Ball, L. A. Virus Taxonomy: VIII th Report of the International Committee on Taxonomy of Viruses (Academic Press, 2005). Liu, S. et al. Fungal DNA virus infects a mycophagous insect and utilizes it as a transmission vector. Proc. Natl Acad. Sci. USA 113 , 12803–12808 (2016). Sacristan, S., Diaz, M., Fraile, A. & Garcia-Arenal, F. Contact transmission of tobacco mosaic virus: a quantitative analysis of parameters relevant for virus evolution. J. Virol. 85 , 4974–4981 (2011). Jones, R. A. C. Plant and insect viruses in managed and natural environments: novel and neglected transmission pathways. Adv. Virus Res. 101 , 149–187 (2018). Hamelin, F. M., Allen, L. J., Prendeville, H. R., Hajimorad, M. R. & Jeger, M. J. The evolution of plant virus transmission pathways. J. Theor. Biol. 396 , 75–89 (2016). Hamelin, F. M. et al. The evolution of parasitic and mutualistic plant–virus symbioses through transmission–virulence trade-offs. Virus Res. 241 , 77–87 (2017). Nault, L. R. Arthropod transmission of plant viruses: a new synthesis. Ann. Entomol. Soc. Am. 90 , 521–541 (1997). Tamada, T. & Kondo, H. Biological and genetic diversity of plasmodiophorid-transmitted viruses and their vectors. J. Gen. Plant Pathol. 79 , 307–320 (2013). CAS Google Scholar Hogenhout, S. A., Ammar el, D., Whitfield, A. E. & Redinbaugh, M. G. Insect vector interactions with persistently transmitted viruses. Annu. Rev. Phytopathol. 46 , 327–359 (2008). Dader, B. et al. Insect transmission of plant viruses: multilayered interactions optimize viral propagation. Insect Sci. 24 , 929–946 (2017). Uzest, M. et al. A protein key to plant virus transmission at the tip of the insect vector stylet. Proc. Natl Acad. Sci. USA 104 , 17959–17964 (2007). Ammar, E.-D., Tsai, C. W., Whitfield, A. E., Redinbaugh, M. G. & Hogenhout, S. A. Cellular and molecular aspects of rhabdovirus interactions with insect and plant hosts. Annu. Rev. Entomol. 54 , 447–468 (2009). Brault, V., Herrbach, E. & Reinbold, C. Electron microscopy studies on luteovirid transmission by aphids. Micron 38 , 302–312 (2007). Blanc, S. & Michalakis, Y. Manipulation of hosts and vectors by plant viruses and impact of the environment. Curr. Opin. Insect Sci. 16 , 36–43 (2016). Safari, M., Ferrari, M. J. & Roossinck, M. J. Manipulation of aphid behavior by a persistent plant virus. J. Virol. 93 , e01781–18 (2019). Mauck, K., Bosque-Perez, N. A., Eigenbrode, S. D., De Moraes, C. M. & Mescher, M. C. Transmission mechanisms shape pathogen effects on host–vector interactions: evidence from plant viruses. Funct. Ecol. 26 , 1162–1175 (2012). Gallitelli, D. The ecology of Cucumber mosaic virus and sustainable agriculture. Virus Res. 71 , 9–21 (2000). Power, A. G. & Flecker, A. S. in Infectious Disease Ecology: The Effects of Ecosystems on Disease and of Disease on Ecosystems Ch. 2 (eds Ostfeld, R. S., Keesing, F. & Eviner, V. T.) (Princeton Univ. Press, 2010). Anderson, P. K. et al. Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. Trends Ecol. Evol. 19 , 535–544 (2004). Gilbertson, R. L., Batuman, O., Webster, C. G. & Adkins, S. Role of the insect supervectors Bemisia tabaci and Frankliniella occidentalis in the emergence and global spread of plant viruses. Annu. Rev. Virol. 2 , 67–93 (2015). Fereres, A. Insect vectors as drivers of plant virus emergence. Curr. Opin. Virol. 10 , 42–46 (2015). Simmonds, P., Aiewsakun, P. & Katzourakis, A. Prisoners of war — host adaptation and its constraints on virus evolution. Nat. Rev. Microbiol. 17 , 321–328 (2019). This study provides both a summary of viral evolutionary rates and a tentative framework to accommodate potentially conflicting long-term and short-term evolutionary rate inferences . Stroud, J. T. & Losos, J. B. Ecological opportunity and adaptive radiation. Annu. Rev. Ecol. Evol. Syst. 47 , 507–532 (2016). Scholthof, K. B. et al. Top 10 plant viruses in molecular plant pathology. Mol. Plant Pathol. 12 , 938–954 (2011). Jacquemond, M. Cucumber mosaic virus. Adv. Virus Res. 84 , 439–504 (2012). Dietzgen, R. G., Mann, K. S. & Johnson, K. N. Plant virus–insect vector interactions: current and potential future research directions. Viruses 8 , E303 (2016). Bragard, C. et al. Status and prospects of plant virus control through interference with vector transmission. Annu. Rev. Phytopathol. 51 , 177–201 (2013). Eastop, V. F. in Aphids As Virus Vectors (eds Harris, K. F. & Maramorosch, K.) 3–62 (Academic Press, 1977). Li, C., Cox-Foster, D., Gray, S. M. & Gildow, F. Vector specificity of barley yellow dwarf virus (BYDV) transmission: identification of potential cellular receptors binding BYDV-MAV in the aphid, Sitobion avenae . Virology 286 , 125–133 (2001). Bedhomme, S., Hillung, J. & Elena, S. F. Emerging viruses: why they are not jacks of all trades? Curr. Opin. Virol. 10 , 1–6 (2015). Elena, S. F. Local adaptation of plant viruses: lessons from experimental evolution. Mol. Ecol. 26 , 1711–1719 (2017). Remold, S. Understanding specialism when the Jack of all trades can be the master of all. Proc. Biol. Sci. 279 , 4861–4869 (2012). Kawecki, T. J. Accumulation of deleterious mutations and the evolutionary cost of being a generalist. Am. Nat. 144 , 833–838 (1994). Cooper, I. & Jones, R. A. Wild plants and viruses: under-investigated ecosystems. Adv. Virus Res. 67 , 1–47 (2006). Rodriguez-Nevado, C., Montes, N. & Pagan, I. Ecological factors affecting infection risk and population genetic diversity of a novel potyvirus in its native wild ecosystem. Front. Plant Sci. 8 , 1958 (2017). Susi, H., Filloux, D., Frilander, M. J., Roumagnac, P. & Laine, A. L. Diverse and variable virus communities in wild plant populations revealed by metagenomic tools. PeerJ 7 , e6140 (2019). Elena, S. F., Fraile, A. & García-Arenal, F. Evolution and emergence of plant viruses. Adv. Virus Res. 88 , 161–191 (2014). McLeish, M. J., Fraile, A. & Garcia-Arenal, F. Ecological complexity in plant virus host range evolution. Adv. Virus Res. 101 , 293–339 (2018). This article presents a comprehensive review of plant virus ecology . Cuevas, J. M., Willemsen, A., Hillung, J., Zwart, M. P. & Elena, S. F. Temporal dynamics of intrahost molecular evolution for a plant RNA virus. Mol. Biol. Evol. 32 , 1132–1147 (2015). Minicka, J., Rymelska, N., Elena, S. F., Czerwoniec, A. & Hasiów-Jaroszewska, B. Molecular evolution of Pepino mosaic virus during long-term passaging in different hosts and its impact on virus virulence. Ann. Appl. Biol. 166 , 389–401 (2015). Ciota, A. T. et al. Experimental passage of St. Louis encephalitis virus in vivo in mosquitoes and chickens reveals evolutionarily significant virus characteristics. PLOS ONE 4 , e7876 (2009). Greene, I. P. et al. Effect of alternating passage on adaptation of sindbis virus to vertebrate and invertebrate cells. J. Virol. 79 , 14253–14260 (2005). Turner, P. E. & Elena, S. F. Cost of host radiation in an RNA virus. Genetics 156 , 1465–1470 (2000). Bedhomme, S., Lafforgue, G. & Elena, S. F. Multihost experimental evolution of a plant RNA virus reveals local adaptation and host-specific mutations. Mol. Biol. Evol. 29 , 1481–1492 (2012). This study provides experimental evidence for the possible existence of no-cost generalists in plant viruses . Hillung, J., Cuevas, J. M., Valverde, S. & Elena, S. F. Experimental evolution of an emerging plant virus in host genotypes that differ in their susceptibility to infection. Evolution 68 , 2467–2480 (2014). Lalic, J., Agudelo-Romero, P., Carrasco, P. & Elena, S. F. Adaptation of tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes. Phil. Trans. R. Soc. B 365 , 1997–2007 (2010). Charron, C. et al. Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg. Plant J. 54 , 56–68 (2008). Jenner, C. E., Wang, X., Ponz, F. & Walsh, J. A. A fitness cost for Turnip mosaic virus to overcome host resistance. Virus Res. 86 , 1–6 (2002). Hillung, J., Garcia-Garcia, F., Dopazo, J., Cuevas, J. M. & Elena, S. F. The transcriptomics of an experimentally evolved plant–virus interaction. Sci. Rep. 6 , 24901 (2016). McCallum, E. J., Anjanappa, R. B. & Gruissem, W. Tackling agriculturally relevant diseases in the staple crop cassava ( Manihot esculenta ). Curr. Opin. Plant Biol. 38 , 50–58 (2017). Almeida, R. P. et al. Ecology and management of grapevine leafroll disease. Front. Microbiol. 4 , 94 (2013). Walls, J., Rajotte, E. & Rosa, C. The past, present, and future of barley yellow dwarf management. Agriculture 9 , 23 (2019). Pinel-Galzi, A., Traore, O., Sere, Y., Hebrard, E. & Fargette, D. The biogeography of viral emergence: rice yellow mottle virus as a case study. Curr. Opin. Virol. 10 , 7–13 (2015). Fargette, D. et al. Molecular ecology and emergence of tropical plant viruses. Annu. Rev. Phytopathol. 44 , 235–260 (2006). Jones, R. A. Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Res. 141 , 113–130 (2009). This article reviews various anthropogenic factors associated with the emergence of plant viruses and the ongoing challenges in mitigating emerging disease threats . Pagan, I. et al. Effect of biodiversity changes in disease risk: exploring disease emergence in a plant–virus system. PLOS Pathog. 8 , e1002796 (2012). Roossinck, M. J. & Garcia-Arenal, F. Ecosystem simplification, biodiversity loss and plant virus emergence. Curr. Opin. Virol. 10 , 56–62 (2015). Rodelo-Urrego, M. et al. Landscape heterogeneity shapes host–parasite interactions and results in apparent plant–virus codivergence. Mol. Ecol. 22 , 2325–2340 (2013). Rocha, C. S. et al. Brazilian begomovirus populations are highly recombinant, rapidly evolving, and segregated based on geographical location. J. Virol. 87 , 5784–5799 (2013). Keesing, F. et al. Impacts of biodiversity on the emergence and transmission of infectious diseases. Nature 468 , 647–652 (2010). This article addresses the impacts of reduced biodiversity on disease transmission . Lima, A. T. et al. Synonymous site variation due to recombination explains higher genetic variability in begomovirus populations infecting non-cultivated hosts. J. Gen. Virol. 94 , 418–431 (2013). Thingstad, T. F. & Lignell, R. Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat. Microb. Ecol. 13 , 19–27 (1997). Coutinho, F. H. et al. Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Nat. Commun. 8 , 15955 (2017). Coutinho, F. H., Gregoracci, G. B., Walter, J. M., Thompson, C. C. & Thompson, F. L. Metagenomics sheds light on the ecology of marine microbes and their viruses. Trends Microbiol. 26 , 955–965 (2018). Mitchell, C. E. & Power, A. G. Release of invasive plants from fungal and viral pathogens. Nature 421 , 625–627 (2003). Borer, E. T., Hosseini, P. R., Seabloom, E. W. & Dobson, A. P. Pathogen-induced reversal of native dominance in a grassland community. Proc. Natl Acad. Sci. USA 104 , 5473–5478 (2007). Malmstrom, C. M., McCullough, A. J., Johnson, H. A., Newton, L. A. & Borer, E. T. Invasive annual grasses indirectly increase virus incidence in California native perennial bunchgrasses. Oecologia 145 , 153–164 (2005). This article addresses the impacts of an invasive plant species on viral dynamics in native plants . Faillace, C. A., Lorusso, N. S. & Duffy, S. Overlooking the smallest matter: viruses impact biological invasions. Ecol. Lett. 20 , 524–538 (2017). This article reviews the impacts of rapidly evolving plant viruses on plant community structure within a biological invasion framework . Cervera, H., Ambros, S., Bernet, G. P., Rodrigo, G. & Elena, S. F. Viral fitness correlates with the magnitude and direction of the perturbation induced in the host’s transcriptome: the Tobacco Etch Potyvirus-Tobacco Case Study. Mol. Biol. Evol. 35 , 1599–1615 (2018). Alizon, S., Hurford, A., Mideo, N. & Van Baalen, M. Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future. J. Evol. Biol. 22 , 245–259 (2009). Anderson, R. M. & May, R. M. Coevolution of hosts and parasites. Parasitology 85 , 411–426 (1982). Doumayrou, J., Avellan, A., Froissart, R. & Michalakis, Y. An experimental test of the transmission–virulence trade-off hypothesis in a plant virus. Evolution 67 , 477–486 (2013). Froissart, R., Doumayrou, J., Vuillaume, F., Alizon, S. & Michalakis, Y. The virulence–transmission trade-off in vector-borne plant viruses: a review of (non-)existing studies. Phil. Trans. R. Soc. B 365 , 1907–1918 (2010). This article reviews our current understanding of the transmission–virulence trade-off hypothesis in the context of plant viruses . Leggett, H. C., Buckling, A., Long, G. H. & Boots, M. Generalism and the evolution of parasite virulence. Trends Ecol. Evol. 28 , 592–596 (2013). Roossinck, M. J. A new look at plant viruses and their potential beneficial roles in crops. Mol. Plant Pathol. 16 , 331–333 (2015). Roossinck, M. J. Plants, viruses and the environment: ecology and mutualism. Virology 479–480 , 271–277 (2015). This review addresses the paradigm shift away from viewing viruses as antagonistic pathogens towards viewing them as possible mutualists . Shates, T. M., Sun, P., Malmstrom, C. M., Dominguez, C. & Mauck, K. E. Addressing research needs in the field of plant virus ecology by defining knowledge gaps and developing wild dicot study systems. Front. Microbiol. 9 , 3305 (2018). Fraile, A. & Garcia-Arenal, F. The coevolution of plants and viruses: resistance and pathogenicity. Adv. Virus Res. 76 , 1–32 (2010). Calil, I. P. & Fontes, E. P. B. Plant immunity against viruses: antiviral immune receptors in focus. Ann. Bot. 119 , 711–723 (2017). Malmstrom, C. M. & Alexander, H. M. Effects of crop viruses on wild plants. Curr. Opin. Virol. 19 , 30–36 (2016). Prendeville, H. R., Ye, X., Morris, T. J. & Pilson, D. Virus infections in wild plant populations are both frequent and often unapparent. Am. J. Bot. 99 , 1033–1042 (2012). Remold, S. K. Unapparent virus infection and host fitness in three weedy grass species. J. Ecol. 90 , 967–977 (2002). Fraile, A. et al. Environmental heterogeneity and the evolution of plant-virus interactions: viruses in wild pepper populations. Virus Res. 241 , 68–76 (2017). Faure, D., Simon, J. C. & Heulin, T. Holobiont: a conceptual framework to explore the eco-evolutionary and functional implications of host–microbiota interactions in all ecosystems. New Phytol. 218 , 1321–1324 (2018). Grasis, J. A. The intra-dependence of viruses and the holobiont. Front. Immunol. 8 , 1501 (2017). Harth, J. E., Ferrari, M. J., Tooker, J. F. & Stephenson, A. G. Zucchini yellow mosaic virus infection limits establishment and severity of powdery mildew in wild populations of Cucurbita pepo. Front. Plant Sci. 9 , 792 (2018). Gibbs, A. A plant virus that partially protects its wild legume host against herbivores. Intervirology 13 , 42–47 (1980). Davis, T. S., Bosque-Perez, N. A., Foote, N. E., Magney, T. & Eigenbrode, S. D. Environmentally dependent host–pathogen and vector–pathogen interactions in the Barley yellow dwarf virus pathosystem. J. Appl. Ecol. 52 , 1392–1401 (2015). Hily, J. M., Poulicard, N., Mora, M. A., Pagan, I. & Garcia-Arenal, F. Environment and host genotype determine the outcome of a plant–virus interaction: from antagonism to mutualism. New Phytol. 209 , 812–822 (2016). This study provides compelling evidence that conditional interactions of plant viruses, plant genotypes and the environment modulate the outcome of symbiosis . Westwood, J. H. et al. A viral RNA silencing suppressor interferes with abscisic acid-mediated signalling and induces drought tolerance in Arabidopsis thaliana . Mol. Plant Pathol. 14 , 158–170 (2013). Xu, P. et al. Virus infection improves drought tolerance. New Phytol. 180 , 911–921 (2008). Prasch, C. M. & Sonnewald, U. Simultaneous application of heat, drought, and virus to Arabidopsis plants reveals significant shifts in signaling networks. Plant Physiol. 162 , 1849–1866 (2013). Berges, S. E. et al. Interactions between drought and plant genotype change epidemiological traits of cauliflower mosaic virus. Front. Plant Sci. 9 , 703 (2018). Bera, S., Fraile, A. & Garcia-Arenal, F. Analysis of fitness trade-offs in the host range expansion of an RNA virus, tobacco mild green mosaic virus. J. Virol. 92 , e01268–18 (2018). Zhang, Y. Z., Shi, M. & Holmes, E. C. Using metagenomics to characterize an expanding virosphere. Cell 172 , 1168–1172 (2018). Saunders, K., Bedford, I. D., Yahara, T. & Stanley, J. Aetiology: the earliest recorded plant virus disease. Nature 422 , 831 (2003). Lesnaw, J. A. & Ghabrial, S. A. Tulip breaking: past, present, and future. Plant Dis. 84 , 1052–1060 (2000). Ivanowski, D. Ueber die Mosaikkrankheit der Tabakspflanze. Bull. Acad. Imp. Sci. 35 , 67–70 (1892). Beijerinck, W. M. Ueber ein contagium vivum fluidum als Ursache der Fleckenkrankheit der Tabaksblatter. Verh. Kon. Akad. Wetensch. 5 , 3–21 (1898). Stanley, W. M. Isolation of a crystalline protein possessing the properties of tobacco-mosaic virus. Science 81 , 644–645 (1935). Kausche, G. A., Pfankuch, E. & Ruska, H. Die Sichtbarmachung von pflanzlichem Virus im Übermikroskop. Naturwissenschaften 27 , 292–299 (1939). Bernal, J. D. & Fankuchen, I. Structure types of protein crystals from virus-infected plants. Nature 139 , 923–924 (1937). Fraenkel-Conrat, H. The genetic code of a virus. Sci. Am. 211 , 47–54 (1964). Anandalakshmi, R. et al. A viral suppressor of gene silencing in plants. Proc. Natl Acad. Sci. USA 95 , 13079–13084 (1998). Hamilton, A. J. & Baulcombe, D. C. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286 , 950–952 (1999). Guo, Z. et al. Identification of a new host factor required for antiviral RNAi and amplification of viral siRNAs. Plant Physiol. 176 , 1587–1597 (2018). Baltimore, D. Expression of animal virus genomes. Bacteriol. Rev. 35 , 235–241 (1971). Bolduc, B. et al. vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria . PeerJ 5 , e3243 (2017). Mihara, T. et al. Linking virus genomes with host taxonomy. Viruses 8 , 66 (2016). Evans, G. A. Host Plant List of The Whiteflies (Aleyrodidae) of The World (USDA Animal Plant Health Inspection Service, 2007). De Barro, P. J., Liu, S. S., Boykin, L. M. & Dinsdale, A. B. Bemisia tabaci : a statement of species status. Annu. Rev. Entomol. 56 , 1–19 (2011). Huang, Y., Niu, B., Gao, Y., Fu, L. & Li, W. CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 26 , 680–682 (2010). Katoh, K. & Standley, D. M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30 , 772–780 (2013). Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59 , 307–321 (2010). Clark, K., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. & Sayers, E. W. GenBank. Nucleic Acids Res. 44 , D67–D72 (2016). Ratnasingham, S. & Hebert, P. D. bold: the Barcode of Life Data System ( http://www.barcodinglife.org ). Mol. Ecol. Notes 7 , 355–364 (2007). Gerlt, J. A. et al. Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): a web tool for generating protein sequence similarity networks. Biochim. Biophys. Acta 1854 , 1019–1037 (2015). Download references AcknowledgementsThe authors are grateful to Y. Michalakis (Centre national de la recherche scientifique, France) and A. Gibbs (Australian Nation University, Australia) for helpful comments and suggestions. P.L. was supported by the European Union: European Regional Development Fund (ERDF), by the Conseil Régional de La Réunion and by the Centre de Coopération internationale en Recherche agronomique pour le Développement (CIRAD). S.F.E. was supported by a grant (BFU2015-65037-P) from Spain Ministry of Science, Innovation and Universities–ERDF. Author informationAuthors and affiliations. CIRAD, UMR PVBMT, St Pierre, La Réunion, France Pierre Lefeuvre Computational Biology Division, Department of Integrative Biomedical Sciences, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa Darren P. Martin Instituto de Biología Integrativa de Sistemas (I2SysBio), CSIC-UV, Paterna, València, Spain Santiago F. Elena The Santa Fe Institute, Santa Fe, NM, USA Research Office, University of Cape Town, Cape Town, South Africa Dionne N. Shepherd CIRAD, UMR BGPI, Montpellier, France Philippe Roumagnac BGPI, CIRAD, INRA, Montpellier SupAgro, University of Montpellier, Montpellier, France The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA Arvind Varsani Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa You can also search for this author in PubMed Google Scholar ContributionsP.L., D.P.M., S.F.E., D.N.S., P.R. and A.V. wrote and edited the manuscript. P.L. and A.V. undertook the analyses for the data presented in figures 1–3. Corresponding authorCorrespondence to Arvind Varsani . Ethics declarationsCompeting interests. The authors declare no competing interests. Additional informationPeer review information. Nature Reviews Microbiology thanks M. Roossinck, A. Whitfield and the other, anonymous, reviewer(s) for their contribution to the peer review of this work. Publisher’s noteSpringer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Related linksPlant viruses dataset: https://lefeup.github.io/plantviruses/ These invertebrate animals have exoskeletons, segmented bodies and paired jointed appendages. Arthropods belong to the phylum Euarthropoda that includes insects, arachnids, myriapods and crustaceans. These enzymes catalyse the synthesis of RNA from an RNA template. RNA-dependent RNA polymerases are essential to the replication of viruses that have no DNA stage. Some plant viruses encode these proteins to facilitate cell-to-cell movement of viral particles and/or uncoated viral nucleic acids. They frequently function by increasing the size exclusion limits of plasmodesmata. Brassica is a genus in the mustard family (Brassicaceae) of plants, which includes cabbage, lettuce and cauliflower. Angiosperms are also known as flowering plants and are the most diverse group of land plants. While both gymnosperms and angiosperms produce seeds, angiosperms are characterized by the presence of flowers, an endosperm within the seeds and the inclusion of seeds within fruits. These microscopic channels traverse plant cell walls enabling intercellular trafficking of macromolecules. This class of plant parasites comprises organisms in the orders Plasmodiophorida and Phagomyxida. They have long been recognized as a basal group to fungi, but recent molecular phylogenetic analysis suggests that they are more closely related to protozoa in the phylum Cercozoa. This order of insects includes insects such as aphids, cicadas, leafhoppers and planthoppers. Most hemipterans feed on plant sap with their sucking and piercing mouthparts. This is the body cavity in arthropods wherein haemolymph (plasma with haemocytes) circulates. These small sap-sucking insects are members of the superfamily Aphidoidea in the Hemiptera order. The phloem is the vascular system in plants within which soluble organic compounds that are produced during photosynthesis are transported. Rights and permissionsReprints and permissions About this articleCite this article. Lefeuvre, P., Martin, D.P., Elena, S.F. et al. Evolution and ecology of plant viruses. Nat Rev Microbiol 17 , 632–644 (2019). https://doi.org/10.1038/s41579-019-0232-3 Download citation Accepted : 13 June 2019 Published : 16 July 2019 Issue Date : October 2019 DOI : https://doi.org/10.1038/s41579-019-0232-3 Share this articleAnyone you share the following link with will be able to read this content: Sorry, a shareable link is not currently available for this article. Provided by the Springer Nature SharedIt content-sharing initiative This article is cited byThe evolutionary trajectories of specialized metabolites towards antiviral defense system in plants. Molecular Horticulture (2024) Dual effects of tomato chlorosis virus on its whitefly vector and its host plant to facilitate viral spreadJournal of Pest Science (2024) Complete genome sequences of two tombusvirus-like viruses identified in Echinacea purpurea seedsVirus Genes (2024) Potential use of Origanum vulgare in agricultural pest management control: a systematic review- Rachid Jbilou
- Radice Matteo
- Kacem Rharrabe
Journal of Plant Diseases and Protection (2024) Biology, phylogenetic and evolutionary relations of Tradescantia mild mosaic virus isolates from Hungary- János Ágoston
- Asztéria Almási
- László Palkovics
Journal of Plant Pathology (2024) Quick links- Explore articles by subject
- Guide to authors
- Editorial policies
Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily. EDITORIAL articleEditorial: microbial modulation to mitigate the impact of climate change on wine production. - 1 Chemistry Research Centre–Vila Real (CQ-VR), Department of Agronomy, School of Agrarian and VeterinarySciences (ECAV), University of Trás-os-Montes and Alto Douro, Vila Real, Portugal
- 2 DAGRI-Department of Agriculture, Food, Environment and Forestry, University of Florence, Florence, Italy
- 3 EnotecUPM, ETSIAAB, Universidad Politécnica de Madrid, Madrid, Spain
Editorial on the Research Topic Microbial modulation to mitigate the impact of climate change on wine production Microorganisms in vineyards and the surrounding soil can alter the composition of the final wine. The microbial community changes at the beginning of the winemaking process, and different types of wine yeasts dominate the grape juice and wine environment. Weather extremes related to climate change can disrupt the microbial balance in the wine, leading to undesirable characteristics in the final product. As winegrowers, winemakers, and scientists, your work is vital in preserving the quality of wine, especially in the face of climate change. The decrease in suitable viticulture areas and changes in grape composition present challenges. Many of you are studying yeasts and bacteria to mitigate these issues in warmer climates. Your work is significant and essential for improving wine quality through understanding and managing microorganisms in the vineyard and during winemaking. As winegrowers, winemakers, and scientists, you are not just at the forefront of mitigating the risks of climate change in the wine industry; you are also shaping its future. Recent advancements in 'omics' technologies have provided new opportunities for us to understand the grape/wine microbial ecosystem better. Specifically, unconventional non- Saccharomyces species, previously considered as spoilage microorganisms, are now recognized as beneficial as they enhance the wine aroma and taste when cultivated in controlled fermentations with Saccharomyces cerevisiae . Furthermore, ongoing biological approaches for modifying wine acidity using Saccharomyces and non- Saccharomyces yeasts and traditional lactic acid bacteria such as Oenococcus oeni and Lactiplantibacillus plantarum are being explored. This Research Topic explores how climate change can impact microbial diversity and subsequently alter wine characteristics. These risks can be mitigated by regulating the microbial community and utilizing yeast derivatives to enhance wine aroma and taste. Your work is not just important; it is empowering, as you are responsible for shaping the future of winemaking. This Research Topic comprises six types of work—one mini-review article, one review article, and four original research articles—written by international researchers to provide up-to-date research on the different dimensions of the vast research world of Microbial Modulation to Mitigate the Impact of Climate Change on Wine Production. The mini-review article ( Comuzzo et al. ) delves into emerging biotechnologies and non-thermal technologies for winemaking in the context of global warming. According to the authors, using non- Saccharomyces yeast species, such as Lachancea thermotolerans , can help manage some global warming wine issues by stabilizing pH and reducing alcohol content. Lower-pH wine improves freshness, palatability, and microbiological stability. Certain yeast species, like Hanseniaspora spp. and Metschnikowia pulcherrima , can enhance aroma complexity, improve the wine's sensory profile, and aid in acidification and bio-protection in winemaking. Bio-protection helps control oxidation, inhibit wild microorganisms, improve the implantation of starters, and limit SO 2 . Reductive yeast derivatives with high contents of reducing peptides and compounds like glutathione are also helpful in reducing SO 2 content. Also, emerging non-thermal technologies like Ultra High-Pressure Homogenization (UHPH) and Pulsed Light (PL) improve wine stability by controlling microbes and deactivating oxidative enzymes, which enhances the use of emerging non- Saccharomyces and reduces SO 2 additions ( Comuzzo et al. ). Puyo et al. studied the topic of bio-protection in enology by M. pulcherrima : From field results to a scientific inquiry. They wrote an interesting mini-review article, which mainly focuses on bio-protection using a non- Saccharomyces yeast, M. pulcherrima , recommended for bio-protecting grape musts. As they state, there are still many unanswered questions about the production of toxic compounds by M. pulcherrima , such as its potential production of killer toxins and its ability to make cell-cell contact interactions. The authors also point out that M. pulcherrima is known for consuming much oxygen. This high consumption could quickly deplete the oxygen in the grape must, preventing it from entering the pathways that lead to wine browning and producing unwanted aromas. Furthermore, M. pulcherrima secretes pulcherriminic acid, which chelates Fe 3+ once released into the medium. This ion is involved in redox mechanisms through the Fenton reaction. Reducing iron in the medium by pulcherriminic acid may also help, to a lesser extent, protect the grape-must from oxidation. This brief review examines the current state of field trials and laboratory studies demonstrating the effects of using yeasts for bio-protection and the interaction mechanisms responsible for these effects. M. pulcherrima was also the focus of the research article published by Torrellas et al. . The study delved into using non- Saccharomyces yeasts as starters in winemaking, namely the industrial problem of efficiently propagating this type of yeast. The work shows that the poor growth of Hanseniaspora vineae and M. pulcherrima in molasses is related to deficient sucrose consumption and low invertase activity. The authors modified the cultivation media to address this Research Topic, which involved hydrolysis and reducing the sucrose concentration. The results indicated that both species showed improved biomass production when cultivated in a hexose-based media, effectively addressing their low invertase activity. Reducing the sugar concentration also led to a respiratory metabolism, resulting in a higher biomass yield. However, the modifications did not enhance biomass production due to reduced sugar availability. To assess the effectiveness of these changes, fermentations using mixed grape juice with biomass produced under conditions similar to M. pulcherrima and S. cerevisiae were conducted. The analysis of the resulting wines indicated that the treatments tested did not negatively impact wine quality, demonstrating their potential for practical application on an industrial scale to improve biomass production. In an original research article, Vion et al. explored the intracellular metabolic variations between seventeen S. cerevisiae strains belonging to two different genetic populations, flor yeasts and wine yeasts, in alcoholic fermentation. These two populations are closely related, share the same ecological niche, and have distinct genetic characteristics. The authors developed a 1H-NMR protocol to measure the intracellular concentration of yeast biomass during the alcoholic fermentation of natural grape juice. The protocol was used to analyze the different metabolic contents of several S. cerevisiae strains (flor and wine yeasts). Additionally, accurate quantification of 21 metabolites in a two-time series provided new results that showed that intracellular metabolic variability is influenced by the sampling time and the yeast strain, with complex interactions that prevent simple physiological conclusions. Dournes et al. in an original research work, focused on the question of copper's impact on varietal thiols in wine, taking into account the use of this compound in organic vineyard management as the sole fungal control pesticide against downy mildew. Colombard and Gros Manseng grape juices were fermented under different copper levels to mimic the consequences in grape-must of organic practices. The authors found that the highest copper level for both grape varieties significantly increased yeast consumption of precursors. Also, for both grape varieties, free thiol content in wine significantly decreased. The amount of thiol produced during fermentation remained constant for Colombard grapes, regardless of copper levels, indicating that copper only had an oxidative effect on this variety. However, during Gros Manseng fermentation, the thiol content increased as the copper content increased, showing a potential 90% increase. This suggests that copper might alter the pathways for producing varietal thiols, highlighting the significant role of oxidation. These findings contribute to understanding how copper affects thiol-focused fermentation and emphasize the importance of considering total thiol production (both reduced and oxidized) to comprehend the impact of studied factors better and distinguish between chemical and biological effects. Considering the importance of yeast co-inoculations in winemaking, which aims to modulate the aromatic profiles of wines, Bordet et al. investigated the impact of three co-cultures and corresponding pure cultures of S. cerevisiae on the chemical composition and sensory profile of Chardonnay wine. The use of co-cultures affected esters, fatty acids, and phenol families. Comparisons between the sensory profiles and metabolomes of co-cultures, pure cultures, and associated wine blends have revealed distinct differences. It was observed that the co-culture did not simply combine the characteristics of the two pure-culture wines, indicating an interaction effect. High-resolution mass spectrometry identified thousands of biomarkers specific to the co-cultures. Additionally, the study highlighted the involvement of metabolic pathways, particularly those related to nitrogen metabolism, in the observed changes in wine composition. The authors concluded that mixed S. cerevisiae yeasts can modulate the aromatic and chemical profile of wines without affecting their fermentative properties. They found that traditional methods, like monitoring yeast populations over time, are insufficient for understanding the interactions between yeast strains. A comprehensive approach involving different techniques is necessary to comprehend these interactions fully. In summary, the Research Topic “ Microbial modulation to mitigate the impact of climate change on wine production ” demonstrates that microbial modulation can mitigate the impact of climate change on wine production using different techniques, yeast strains, and biochemical approaches. Moreover, when conjugated with cutting-edge analytical methods, biotechnologies, and non-thermal technologies, it helps improve wine quality and safety. Author contributionsAV: Writing – original draft, Writing – review & editing, Conceptualization, Project administration. PD: Writing – review & editing, Conceptualization, Project administration, Validation. AM: Writing – review & editing, Conceptualization, Project administration, Validation. The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article. AcknowledgmentsAV greatly indebted to the authors who generously shared their scientific knowledge and experience with others through their contribution to this Research Topic. AV incredibly thankful to AM and PD for embracing this small adventure with me. Conflict of interestThe authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Publisher's noteAll claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher. Keywords: non-saccharomyces yeasts, mixed-culture fermentations on wine quality, biotechnological strategies to improve wine production and safety, bioprotection and sulfur dioxide reduction, non-thermal technologies Citation: Vilela A, Domizio P and Morata A (2024) Editorial: Microbial modulation to mitigate the impact of climate change on wine production. Front. Microbiol. 15:1465637. doi: 10.3389/fmicb.2024.1465637 Received: 16 July 2024; Accepted: 23 July 2024; Published: 07 August 2024. Edited and reviewed by: Giovanna Suzzi , University of Teramo, Italy Copyright © 2024 Vilela, Domizio and Morata. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. *Correspondence: Alice Vilela, avimoura@utad.pt Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher. |
IMAGES
VIDEO
COMMENTS
Virology articles from across Nature Portfolio. Virology is the scientific discipline concerned with the study of the biology of viruses and viral diseases, including the distribution ...
Current Topics in Virology publishes the results of fundamental and applied research in all branches of virology, including the viruses of vertebrates and invertebrates, plants, bacteria, and yeasts/fungi. It publishes original research articles, full-length reviews, mini-reviews and short communications.
A multidisciplinary journal which explores all biological and molecular aspects of viruses, with a focus on innovative investigative and analytical systems.
Virology News. Read current research on the virus structure, specific viruses (H5N1 flu, West Nile virus, HIV and more) and responses.
Read the latest Research articles in Virology from Scientific Reports
Read the latest Research articles in Virology from Nature Medicine
Development of Biosensors and CRISPR/Cas Systems in Virology. Computational Virology and Immunology: Integrating Data Science for RNA Virus Research. Development and Optimization of in vitro Antiviral Drug Screening Assays for Emerging and Re-Emerging Viral Pathogens. Blood-borne viral infections in low and middle-income countries: evolution ...
The articles of this year's "Virus-Host Interaction" section of Current Opinion in Virology summarize and discuss recent advances on viral interactions with host factors that play a pivotal role in innate immune surveillance and IFN-stimulated gene (ISG) responses, cell death pathways, intracellular organelle organization, and epigenetic gene regulation. Whereas the primary focus of ...
This Research Topic is part of the Insights in Frontiers in Microbiology series.<br/><br/>We are now entering the third decade of the 21st Century, and, especially in the last years, the achievements made by scientists in the field of Microbiology have been exceptional, leading to major advancements. Frontiers has organized a series of Research Topics to highlight the latest advancements in ...
5th Rhine-Main Symposium on HIV and Macrophages. View all issues. Read the latest articles of Research in Virology at ScienceDirect.com, Elsevier's leading platform of peer-reviewed scholarly literature.
Current Opinion in Virology (COVIRO) is a systematic review journal that aims to provide specialists with a unique and educational platform to keep up to date with the expanding volume of information published …. View full aims & scope. $3480. Article publishing charge.
Read the latest articles of Current Research in Virological Science at ScienceDirect.com, Elsevier's leading platform of peer-reviewed scholarly literature
Virology Journal is an open access, peer reviewed journal that considers articles on all aspects of virology, including research on the viruses of animals, plants and microbes. The journal welcomes basic research as well as pre-clinical and clinical studies of novel diagnostic tools, vaccines and anti-viral therapies. Read more.
Deadly diseases and inflatable suits: how I found my niche in virology research Virologist Hulda Jónsdóttir studies some of the world's most pathogenic viruses at the Spiez Laboratory in ...
News-Medical is your trusted source of Virology news, articles and research for doctors, patients, and families.
Diagnosis of plant viruses using next-generation sequencing and metagenomic analysis, in Current Research Topics in Plant Virology, eds Wang A., Zhou X. (Cham: Springer; ), 323-335. 10.1007/978-3-319-32919-2_14 [ CrossRef] [ Google Scholar]
Topics covered in this book include RNA silencing and its suppression in plant virus infection, virus replication mechanisms, the association of cellular membranes with virus replication and movement, plant genetic resistance to viruses, viral cell-to-cell spread, long distance movement in plants, virus induced ER stress, virus diversity and ...
1. Molecular characterization of wild infectious bursal disease viruses (IBDV) that are implicated in vaccination failures in North East of Algeria. Original Article. Pages 1 - 8. Amine Boudaoud, Bakir Mamache, Wafa Tombari, Jihene Lachhab, Abdeljelil Ghram, Nadir Alloui. Abstract | Buy this article.
Aims and Scope. Current Research in Virology is ready to receive high quality research articles, CRV is dedicated to cover studies of viruses and virus-like agents, their structure, classification and evolution, their ways to infect and exploit cells for virus reproduction, the diseases they cause, the techniques to isolate and culture them ...
Systems virology is the scientific discipline that integrates high-throughput molecular techniques and computational tools to study all aspects of viruses and viral diseases, in an effort to ...
The US has one of the strongest and safest infrastructures for research globally. The policies aimed at virology research in the US will not protect against work with viruses of known pandemic potential occurring at inadequate biosafety containment (below biosafety level 3) in other countries, which poses the risk of lab exposures.
Researchers have discovered new ways of preventing and treating respiratory viruses. In two new papers, the team reports the development and validation of NanoSTING, a nasal spray, as a broad ...
Virology: Current Research is an open access peer reviewed journal initiated by Hilaris SRL aims to provide cutting-edge research findings in the field of virology. The journal offers broad coverage to the researchers those who are interested in virology and related fields. Virology: Current Research an avenue and provide a forum for the ...
SARS-CoV-2 articles from across Nature Portfolio SARS-CoV-2 is a positive-sense single-stranded RNA virus. It is contagious in humans and is the cause of the coronavirus disease 2019 (COVID-19).
The pervasive perception that plant viruses are primarily pathogens has meant that most plant virology research has focused on the causes and consequences of virus pathology.
This Research Topic comprises six types of work—one mini-review article, one review article, and four original research articles—written by international researchers to provide up-to-date research on the different dimensions of the vast research world of Microbial Modulation to Mitigate the Impact of Climate Change on Wine Production.